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324727 Endoglycosidase F3, Elizabethkingia meningosepticum, Recombinant, E. coli

Endoglycosidase F3, Elizabethkingia meningosepticum, Recombinant, E. coli, cleaves asparagine-linked or free biantennary and triantennary complex, and Man3GlcNAc oligosaccharides from glycoproteins.

MSDS (material safety data sheet) or SDS, CoA and CoQ, dossiers, brochures and other available documents.

Synonyms: Endo-β-N-acetylglucosaminidase F3, Endo F3

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Overview

Replacement Information

Products

Catalog NumberPackaging Qty/Pack
324727-200MIU Plastic ampoule 200 miu
Description
OverviewRecombinant, Elizabethkingia meningosepticum endoglycosidase F3 expressed in E. coli. Cleaves asparagine-linked or free biantennary and triantennary complex, and Man3GlcNAc oligosaccharides from glycoproteins. This enzyme cleaves between the two N-acetylglucosamine residues in the diacetylchitobiose core of the oligosaccharide, generating a truncated sugar molecule with one N-acetylglucosamine residue remaining on the asparagine residue. Core fucosylation increases the activity of Endo F3 up to 40 fold. Exhibits no activity on high mannose and hybrid molecules. Less sensitive to protein conformation than N-Glycosidase F (Cat. No. 362185) and therefore is more suitable for deglycosylation of native proteins.
Note: 1 mU = 1 milliunit.
Catalogue Number324727
Brand Family Calbiochem®
SynonymsEndo-β-N-acetylglucosaminidase F3, Endo F3
References
ReferencesTarentino, A.L., et al. 1995. Glycobiology 5, 599.
Tarentino, A.L., and Plummer, T.H. 1994. Methods Enzymol. 230, 44.
Tarentino, A.L., et al. 1993. J. Biol. Chem. 268, 9702.
Trimble, R.B., and Tarentino, A.L. 1991. J. Biol. Chem. 266, 1646.
Product Information
Activity≥5 units/ml
Unit of DefinitionOne unit is defined as the amount of enzyme that will release N-linked oligosaccharides from 1.0 µmol porcine fibrinogen per min at 37°C, pH 5.5.
EC number3.2.1.96
FormLiquid
FormulationIn 20 mM Tris-HCl, pH 7.5.
Quality LevelMQ100
Applications
Biological Information
Specific Activity≥30 units/mg protein
Physicochemical Information
ContaminantsProteases: none detected
Dimensions
Materials Information
Toxicological Information
Safety Information according to GHS
Safety Information
Product Usage Statements
Storage and Shipping Information
Ship Code Blue Ice Only
Toxicity Standard Handling
Storage +2°C to +8°C
Do not freeze Yes
Packaging Information
Transport Information
Supplemental Information
Specifications
Global Trade Item Number
Catalog Number GTIN
324727-200MIU 04055977216011

Documentation

Endoglycosidase F3, Elizabethkingia meningosepticum, Recombinant, E. coli SDS

Title

Safety Data Sheet (SDS) 

Endoglycosidase F3, Elizabethkingia meningosepticum, Recombinant, E. coli Certificates of Analysis

TitleLot Number
324727

References

Reference overview
Tarentino, A.L., et al. 1995. Glycobiology 5, 599.
Tarentino, A.L., and Plummer, T.H. 1994. Methods Enzymol. 230, 44.
Tarentino, A.L., et al. 1993. J. Biol. Chem. 268, 9702.
Trimble, R.B., and Tarentino, A.L. 1991. J. Biol. Chem. 266, 1646.
Data Sheet

Note that this data sheet is not lot-specific and is representative of the current specifications for this product. Please consult the vial label and the certificate of analysis for information on specific lots. Also note that shipping conditions may differ from storage conditions.

Revision19-June-2008 RFH
SynonymsEndo-β-N-acetylglucosaminidase F3, Endo F3
DescriptionRecombinant, Elizabethkingia meningosepticum endoglycosidase F3 expressed in E. coli. Cleaves asparagine-linked or free biantennary and triantennary complex, and Man3GlcNAc oligosaccharides from glycoproteins. This enzyme cleaves between the two N-acetylglucosamine residues in the diacetylchitobiose core of the oligosaccharide generating a truncated sugar molecule with one N-acetylglucosamine residue remaining on the asparagine residue. Core fucosylation increases the activity of Endo F3 up to 40 fold. Exhibits no activity on high mannose and hybrid molecules. Less sensitive to protein conformation than N-Glycosidase F (Cat. No. 362185) and therefore is more suitable for deglycosylation of native proteins.
FormLiquid
FormulationIn 20 mM Tris-HCl, pH 7.5.
Recommended reaction conditions50 mM sodium acetate buffer, pH 4.5 Endoglycosidase F3, Chryseobacterium meningosepticum, Recombinant, E. coli Note: This protocol is provided only as a general guideline. Researchers should standardize this assay for their own specific needs and should consult published literature. Endoglycosidase F3 cleaves asparagine-linked or free biantennary and triantennary complex oligosaccharides and Man3GlcNAc oligosaccharides from glycoproteins. It cleaves between the two N-acetylglucosamine residues in the diacetylchitobiose core of the oligosaccharide, generating a truncated sugar molecule with one Nacetylglucosamine residue remaining on the asparagine residue. Core fucosylation increases the activity of the Endoglycosidase F3 up to 40-fold. Endoglycosidase F3 is less sensitive to protein conformation than N-Glycosidase F (Cat. No. 362185) and is, therefore, more suitable for deglycosylation of native proteins. Endo F3 is highly sensitive to the presence of detergents, so it is recommended that any residual detergents be removed prior to deglycosylation. Required Reagents • Substrate: porcine fibrinogen (6.1 mg/ml) in 1X assay buffer • Diluted enzyme preparation: dilute the endoglycosidase F3 1:400 in 1X assay buffer • 5X assay buffer: 250 mM sodium acetate, pH 4.5 • Triton® X-100 detergent (Cat. No. 648462): 15% solution • SDS-PAGE system Protocol 1. Add 50 µl (304 µg) of substrate to each of 6 tubes. 2. Add 0, 1, 2, 3, 4, or 5 µl of diluted enzyme to appropriately labeled tubes and incubate 1 h at 37°C. 3. Stop the reaction by heating to 100°C for 5 min. 4. Run 10 µl of each sample on a 10% SDS-PAGE gel. Stain with Coomassie Blue. 5. Note the lowest tube number in which ~50% of the substrate is cleaved. 6. Calculate the activity: Units/ml = µmol/min/ml = (8 X 105) R/M T V R = 152 (µg of fibrinogen cleaved M = 185,000 (formula weight of fibrinogen) T = 60 (time in min) V = volume (µl) of enzyme dilution needed to cleave 50% For example: if 2 µl of diluted enzyme results in 50% cleavage, the activity would be 5.5 U/ml. Assay for Deglycosylation Required Reagents • 5X assay buffer: 250 mM sodium acetate, pH 4.5 • sterile dH2O • glycoprotein sample • Endoglycosidase F3 • SDS-PAGE system Protocol 1. Add up to 200 µg of glycoprotein to an eppendorf tube and adjust the final volume to 37.5 µl with dH2O. 2. Add 10 µl of 5X assay buffer. 3. Add 2 µl of Endoglycosidase F3 to the reaction, mix well, and incubate for 1 h at 37°C. Note: When cleaving non-core fucosylated biantennary and triantennary N-linked oligosaccharides, increase the incubation time to 15 days. Many glycoproteins are contaminated with proteases. We advise adding suitable protease inhibitors if long duration incubations are anticipated. As an alternative to long duration incubations with Endoglycosidase F3 for removal of other classes of N-linked oligosaccharides, we suggest using our Glycoprotein Deglycosylation Kit (Cat. No. 362280). 4. Monitor cleavage by SDS-PAGE. Stain with Coomassie Blue.
EC number3.2.1.96
ContaminantsProteases: none detected
Specific activity≥30 units/mg protein
Activity≥5 units/ml
Unit definitionOne unit is defined as the amount of enzyme that will release N-linked oligosaccharides from 1.0 µmol porcine fibrinogen per min at 37°C, pH 5.5.
Storage +2°C to +8°C
Do Not Freeze Yes
Toxicity Standard Handling
ReferencesTarentino, A.L., et al. 1995. Glycobiology 5, 599.
Tarentino, A.L., and Plummer, T.H. 1994. Methods Enzymol. 230, 44.
Tarentino, A.L., et al. 1993. J. Biol. Chem. 268, 9702.
Trimble, R.B., and Tarentino, A.L. 1991. J. Biol. Chem. 266, 1646.